I was speaking of bike engines in general, not so much the wiring. Most have staged injection and electronic secondary throttle bodies, electronic throttle bodies in the exhaust etc. IIRC the R1 went to an odd-fire in 08, unsure if the R6 went the same way. I think all they did with the crank/cam is bump up the resolution.
What you need(or are allowed to have) depends on the application, I suppose. FWIW I know guys who have installed bike engines in things heavier than bikes who removed the EXUP and or secondary throttle bodies only to report mild loss in throttle response and low/mid range power.
"In 2006, Yamaha advertised that the R6 had a redline of 17,500 rpm." -- wikipedia Impressive if true

-sean